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Encyclopedia of Bioinformatics and Computational Biology.

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Bibliographic Details
Corporate Author: ScienceDirect (Online service)
Other Authors: Ranganathan, Shoba, Cannataro, Mario, Asif Khan, Mohammad
Format: eBook
Language:English
Published: Amsterdam : Elsevier, 2025.
Edition:2nd ed.
Series:Encyclopedia of Bioinformatics and Computational Biology.
Subjects:
Bioinformatics > Encyclopedias.
Computational biology > Encyclopedias.
Bio-informatique > Encyclopédies.
Electronic books.
Online Access:Connect to the full text of this electronic book
Table of Contents:
  • E978032395502701
  • Cover
  • ENCYCLOPEDIA OF BIOINFORMATICS ANDCOMPUTATIONAL BIOLOGY
  • CONTENTS OF VOLUME 1
  • LIST OF CONTRIBUTORS FOR VOLUME 1
  • EDITOR BIOGRAPHIES
  • PREFACE
  • Introduction to Methods Section
  • Algorithms Foundations
  • Key Points
  • Introduction
  • Algorithms and Their Complexity
  • Iterative Algorithms
  • Recursive Algorithms: Divide and Conquer
  • Data Structures
  • Examples: Arrays and Trees
  • Heap: a tree-based data structure
  • Heapsort
  • Dictionaries
  • Data Structures in Bioinformatics
  • Closing Remarks
  • References
  • Techniques for Designing Bioinformatics Algorithms
  • Key Points
  • Introduction
  • Exhaustive Search
  • Decrease and Conquer
  • Transform and Conquer
  • Divide and Conquer
  • Randomized Algorithms
  • Dynamic Programming
  • Backtracking and Branch-and-Bound
  • Greedy Algorithms
  • Iterative Algorithms
  • Conclusion
  • References
  • Algorithms for High Utility Pattern Mining
  • Key Points
  • Introduction
  • Background
  • Approaches for HUPM and its Variants
  • Algorithms for HUPM
  • Two-phase algorithms
  • One-phase algorithms
  • Variants of the classical HUPM problem
  • Extending HUPM
  • Extended Models for HUPM
  • Application of the Extended Model to a Biomedical Context
  • Conclusion
  • Acknowledgment
  • References
  • Algorithms for Strings and Sequences: Pairwise Alignment
  • Key Points
  • Introduction
  • Background
  • Methodologies
  • Global Alignment
  • Local Alignment
  • Extension to Affine gap Model
  • Scoring Functions
  • Algorithm Implementations
  • Conclusion
  • References
  • Further Reading
  • Algorithms for Strings and Sequences: Multiple Alignment
  • Key Points
  • Introduction
  • Multiple Sequence Alignment Algorithms
  • Tools for Multiple Sequence Alignment
  • Conclusion
  • References
  • Algorithms for Structure Comparison and Analysis: Prediction of Structures of Proteins
  • Key Points
  • Introduction of the Topic
  • Milestones of Protein Structure Prediction Before AI: Review of the Literature
  • Prediction of Secondary Structures of the Proteins
  • Prediction of Tertiary Structures of the Proteins
  • Deep Learning: The Tale of the "Game Changer" in the Field of Protein Structure Prediction
  • Prediction of Secondary Structures of the Proteins
  • Prediction of Tertiary Structures of the Proteins
  • State-of-the-Art of the Topic
  • Prospect and Challenges
  • References
  • Relevant Websites
  • Ab initio Protein Structure Prediction
  • Introduction
  • Ab initio Protein Structure Prediction
  • Scoring Functions
  • Physics-based functions
  • Knowledge-based functions
  • Physics and knowledge-based integrated functions
  • Conformation Sampling
  • Automation of Ab initio Structure Prediction
  • Rosetta
  • QUARK
  • TOUCHSTONE
  • Bhageerath
  • ASTRO-FOLD
  • RaptorX-FM
  • RM2TS
  • UniCon3D
  • Accuracy Measures for Comparing Structures
  • Root Mean Square Deviation (RMSD)
  • Global Distance Test (GDT) Score