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Environmental metagenomics, water quality and possible remediation measures of polluted waters : a combined approach /

Bibliographic Details
Corporate Author: ScienceDirect (Online service)
Other Authors: Tyagi, Inderjeet (Editor)
Format: eBook
Language:English
Published: Amsterdam ; Cambridge, MA : Elsevier, [2024]
Subjects:
Water quality.
Water > Pollution.
Metagenomics.
Eau > Qualité.
Métagénomique.
Electronic books.
Online Access:Connect to the full text of this electronic book
Table of Contents:
  • Front cover
  • Half title
  • Title page
  • Copyright
  • Dedication
  • Contents
  • Contributors
  • About the editors
  • Preface
  • Acknowledgments
  • Chapter 1 Aqueous ecosystem: Environmental metagenomics, water quality, and possible remediation measures
  • 1.1 Introduction
  • 1.2 Environmental metagenomics protocols
  • 1.2.1 Study design and sample collection
  • 1.2.2 DNA extraction
  • 1.2.3 DNA sequencing and bioinformatics
  • 1.3 Linking metagenomics to water quality, biogeochemical cycles, and bioremediation
  • 1.4 Conclusion and future recommendations
  • Acknowledgment
  • References
  • Chapter 2 Environmental metagenomics and associated functional annotations in the polluted ecosystem: Antimicrobial resistance perspective
  • 2.1 Introduction
  • 2.2 Importance of environmental antimicrobial resistance
  • 2.3 Tools for metagenomic analysis and relevance
  • 2.3.1 Sampling, Metadata and DNA extraction
  • 2.3.2 Sequencing, quality control, and trimming
  • 2.3.3 Library preparation
  • 2.3.4 Analysis of NGS sequences
  • 2.3.5 Assembly and binning
  • 2.3.6 Taxonomy mapping, annotation, and statistical analysis
  • 2.4 Metagenomic data
  • 2.4.1 Wastewater
  • 2.4.2 Surface water
  • 2.4.3 Brackish water
  • 2.4.4 Other sources of AMR
  • 2.5 Application of metagenomic data for AMR mitigation strategy and recent advancements
  • 2.6 Future prospects and conclusion
  • References
  • Chapter 3 Next-generation sequencing technologies for microbial communities' identification and characterization from aquatic and soil ecosystems for integrated management
  • 3.1 Introduction
  • 3.2 Microbial network of aquatic and soil ecosystem for isolation, identification, and characterization
  • 3.3 Genomic and metagenomic DNA isolation protocols of microbiomes from aquatic and soil ecosystem
  • 3.4 Sequence platforms/technologies for microbial identification and characterization
  • 3.5 NGS library preparation based on emulsion and polony PCR
  • 3.5.1 Making NGS library
  • 3.6 NGS file format
  • 3.7 Microbial identification and characterization using sequence databases
  • 3.8 Conclusion
  • References
  • Chapter 4 Recent advances in the field of trace-level analysis of environmental samples
  • 4.1 Introduction
  • 4.1.1 Water pollution is a complex problem
  • 4.1.2 The aftermath of water pollution
  • 4.2 Aquatic monitoring
  • 4.2.1 History of aquatic monitoring
  • 4.2.2 Major challenges in the monitoring of aquatic samples
  • 4.2.3 Classification of water monitoring techniques
  • 4.3 Sampling and sample preparation
  • 4.3.1 Sampling design and strategies
  • 4.3.2 Sampling techniques for soil and water analysis
  • 4.3.3 Sample preparation
  • 4.3.4 Analysis of metal and other inorganics in water
  • 4.3.5 Analysis of organic contaminants in water
  • 4.4 Advanced techniques of environmental analysis
  • 4.5 Conclusion
  • References
  • Chapter 5 Detailed overview of techniques used across the globe for the remediation of pollutants from polluted water