Advances in Applied Microbiology. Volume 122 /

Advances in Applied Microbiology, continues the comprehensive reach of this widely read and authoritative review source in microbiology. Users will find invaluable references and information on a variety of areas relating to the topics of microbiology.

Bibliographic Details
Corporate Author:	ScienceDirect (Online service)
Other Authors:	Gadd, Geoffrey M. (Editor), Sariaslani, Sima (Editor)
Format:	eBook
Language:	English
Published:	Cambridge : Academic Press, [2023]
Series:	Advances in applied microbiology series 122.
Subjects:	Industrial microbiology. Microbiologie industrielle. Electronic books.
Online Access:	Connect to the full text of this electronic book

Table of Contents:

Intro
Advances in Applied Microbiology
Copyright
Contents
Contributors
Chapter One: Advanced imaging techniques: microscopy
1. Introduction
2. Fluorescence light microscopy (fLM) and super-resolution light microscopy (srLM)
2.1. Single molecule localization microscopy (PALM/STORM)
2.2. Structured illumination microscopy (SIM)
2.3. Stimulated emission depletion microscopy (STED)
3. Cryo-electron microscopy (cryo-EM)
3.1. Single particle analysis (SPA)
3.2. Cryo-electron tomography (cryo-ET)
3.2.1. Subtomogram averaging
3.2.2. Correlative light and electron microscopy (CLEM)
3.2.3. Cryo-focused ion beam (Cryo-FIB) milling and lift-out
3.2.4. Super-resolution cryo-CLEM, cryo-FIB and cryo-ET of bacterial cells
4. Conclusion
References
Chapter Two: Biofilm ecology associated with dental caries: understanding of microbial interactions in oral communities l ...
1. Introduction
2. Microbial interactions in healthy and disease (dental caries) states
2.1. Dental caries
2.1.1. Initiation of biofilm formation-Adhesion, coadhesion, and coaggregation
2.1.2. Matured biofilms
2.2. Microbial interactions in the plaque biofilms
2.2.1. Synergistic interactions
2.2.1.1. Physical associations
2.2.1.1.1. Early colonizers-Streptococcal adhesion factors
2.2.1.1.2. Intermediate connecting the early and late colonizers
2.2.1.1.3. Late colonizers
2.2.1.1.4. Organization of native plaque biofilm
2.2.1.2. Chemical association
2.2.1.2.1. Metabolic cooperation via nutritional cross-feeding: Bacterial interactions
2.2.1.2.2. Metabolic cooperation via nutritional cross-feeding: Bacterial-fungal interactions
2.2.1.2.3. Cell-cell signaling interactions-Quorum sensing
2.2.1.2.4. EPS-rich and acidic microenvironment.
2.2.1.2.5. Enzyme-substrate complementation and spatial organization
2.2.1.2.6. Horizontal gene transfer
2.2.2. Antagonistic interactions
2.2.2.1. Chemical interference
2.2.2.1.1. Cell-cell signaling molecules
2.2.2.1.2. Bacteriocins
2.2.2.1.3. H2O2
2.2.2.1.4. Organic acids and pH
2.3. Extrinsic factors (host factors/diet) affecting microbial interaction
3. Microbial interaction-based intervention strategy for modulating oral biofilm dysbiosis
3.1. Interference of symbiotic interactions of pathobiont by applying antagonists: Inhibition of pathobiont colonization ...
3.2. Inhibition of pathogen colonization via cell growth inhibition and metabolic interference using natural compounds
3.3. Blocking of microbial symbiotic properties for cell assembly via enzymatic treatment
3.4. Enhancement of antagonistic interactions
3.4.1. Enhancement of antagonistic interactions of commensals against pathogen: Regulation of metabolic activity of patho ...
3.4.1.1. Prebiotics
3.4.1.2. Fluoride
3.4.1.3. Synbiotics: Enhancement of commensal bacterial colonization and modulation of metabolism in pathogens
3.4.1.4. Nanoparticles and nanozymes
3.4.1.5. Simultaneous diagnosis and inhibition of pathobiont
4. Conclusions
Acknowledgments
References
Chapter Three: BioMateriOME: to understand microbe-material interactions within sustainable, living architectures
1. Introduction
2. The BioMateriOME prototype
2.1. Materials
3. Making with microbes-Biofabrication
3.1. Bacterial cellulose
3.2. Algae
3.3. Fungi
3.4. The future of biofabrication
3.4.1. Feasibility-Home bioreactors for life support of living materials?
4. Microbiome development on surface materials
4.1. Microbiomes associated with conventional surface materials.
4.2. Microbiomes associated with novel surface biomaterials
4.3. Viral communities on surfaces in the built environment
4.3.1. Influenza/norovirus studies
4.3.2. Coronavirus studies
4.3.3. Phage and mycovirus studies
4.3.4. Methods to analyze viral communities
4.4. Factors affecting built environment surface microbiomes
5. Societal perceptions of biomaterials within the built environment
5.1. Healthy architecture
5.1.1. Health of inhabitants
5.1.2. Living architecture
5.1.3. Healthy materials in architecture
5.1.4. The role of material libraries-A systems approach
6. Responsible practices in design and construction
6.1. Design and construction benchmarks
6.2. Design and construction regulation
6.3. Antibiotic measures
6.4. Probiotic measures
Acknowledgments
References
Chapter Four: Metabolic engineering of Escherichia coli for efficient production of l-arginine
1. Introduction
2. l-Arg biosynthetic pathway
3. Major strategies to control the l-Arg biosynthetic pathway in E. coli
3.1. Eliminate the feedback inhibition effect of the final product l-Arg on gene argA
3.2. Eliminate or weaken the transcriptional inhibitory effect of ArgR on each arginase
3.3. Enhance metabolic flow in the l-Arg pathway
4. l-Arg degradation pathway and corresponding regulation strategies
5. Optimizing precursor supply to enhance l-Arg accumulation
5.1. Enhance carbon supply for l-Arg synthesis pathway
5.2. Enhance ammonia supply for l-Arg synthesis pathway
6. l-Arg transport system and its regulation strategy
7. Cofactor NADPH and energy system regulation strategies
7.1. Effect of NADPH on l-Arg synthesis and its regulatory strategy
7.2. Effects of ATP on l-Arg synthesis and its regulatory strategies
8. Conclusions and perspectives
Acknowledgments.
Compliance with ethical standards
References.