Functional metagenomics : microbial diversity, interaction and application in bioremediation /

Functional Metagenomics: Microbial Diversity, Interaction, and Application in Bioremediation uses a 20-chapter, easy-to-understand format to centralize the practical application ideas for functional metagenomics.

Bibliographic Details
Corporate Author:	ScienceDirect (Online service)
Other Authors:	Shah, Maulin P.
Format:	eBook
Language:	English
Published:	[S.l.] : Academic Press, 2024.
Subjects:	Metagenomics. Bioremediation. Métagénomique. Biorestauration. Electronic books.
Online Access:	Connect to the full text of this electronic book

Table of Contents:

Front Cover
Functional Metagenomics
Functional Metagenomics: Microbial Diversity, Interaction, and Application in Bioremediation
Copyright
Contents
Contributors
1
Overcoming industrial challenges in microbial bioremediation: Leveraging modern technologies and sustainable pr ...
1. Introduction
2. Bioremediation processes
3. Advantages of bioremediation
4. Factors affecting the bioremediation process
5. Challenges in the bioremediation process
6. Addressing the challenges using modern technologies
7. Conclusion
References
2
Metagenomics: A new horizon for bioremediation in 21st century
1. Introduction
2. Environmental systems biology
3. Metagenomics
4. Metatranscriptomics and metaproteomics
5. Techniques to study metagenomics
5.1 Culture-dependent enrichment
6. Community profiling
7. Identifying genes and genomes mediating biodegradations
8. Industrial enzyme discovery using microbial metagenomics
9. Applications of metagenomics in bioremediation
10. Metagenomic bioremediation of different contaminations
11. Microbial metagenomics in agriculture
12. Environmental monitoring and bioremediation using microbial metagenomics
13. Recent advancements in technologies associated with metagenomics
14. Conclusions
References
3
Application of metagenomics in the field of biotechnological conversion of lignocellulosic residues
1. Introduction
2. Lignocellulosic biomass
2.1 Composition
2.2 Biotechnological potential of lignocellulosic residues
2.3 Microbial diversity in lignocellulosic residues
3. Metagenomic approach
3.1 Pretreatment of environmental samples
3.2 DNA extraction
3.3 Construction of metagenomic library
3.3.1 Vector selection
3.3.2 Host selection
3.4 Metagenomic library screening.
3.4.1 Functional-based screening
3.4.2 Compound configuration screening
3.4.3 DNA sequence-based screening
4. Industrial property on new technologies involving metagenomic approaches
5. Conclusions
References
4
Metagenomics to unravel the microbial biodiversity and biotechnological potential of extreme high salinity envi ...
1. Introduction
2. Extreme environments and extremophiles
2.1 Extremophile (micro)organisms
3. Culture-independent approaches in the metagenomics era
3.1 Sequence-based metagenomics
3.2 Function-based metagenomics
3.3 Some challenges of metagenomics
4. Metagenomics as a tool to mine the biodiversity and biotechnological potential of extremophile communities
4.1 Novel extremophiles
4.2 New bioactive molecules
4.3 Novel genes
5. Metagenomics in hypersaline environments
5.1 High salinity environments
5.2 Metagenomics and biodiversity in high salinity environments
5.2.1 Novel phylogenetic groups
5.2.2 Novel taxa
5.2.3 Insight into halophilic viruses
5.3 Bioactive molecules of high salinity environments unveiled by metagenomics
5.3.1 Enzymes
5.3.2 Antimicrobial compounds
5.3.3 Biosurfactants
6. Concluding remarks
References
5
Analysis of complex microbial communities in soil and wastewater treatment processes
1. Introduction
2. Soil treatment with microbes
2.1 Microbial degradation of toxins in soil
2.2 Genetically modified bacteria for treatment of soil
2.3 Bioventing
2.4 Biosparging
2.5 Biostimulation
2.6 Bioaugmentation
3. Microbes in wastewater treatment
3.1 Wastewater microbial diversity
3.2 Bioremediation
3.3 Biofilm technology
3.4 Microbial fuel cell technology
4. Conclusion
References
Further reading
6
Response of microbial communities to environmental changes
1. Introduction.
2. Role of microbes in biogeochemicial cycle
2.1 Microbes in carbon cycle
2.2 Microbial role in nitrogen cycle
2.3 Methane cycle and microbial communities
3. Climate change and impact on microorganisms
3.1 Causes of climate change
3.2 Climate change's impact on microorganisms
3.3 Microbes adapting to environmental challenges
4. Conclusion
References
Further reading
7
Gene prediction through metagenomics
1. Introduction
2. Overview of metagenomics
3. Sequencing the microbiome genome
3.1 Metagenomic data analysis
4. Gene prediction
4.1 Gene prediction methods
4.1.1 Sequence similarity-based searches
4.1.2 Ab initio method
5. Future prospects
References
Further reading
8
Role of microbes in climate change and its impact: A critical review
1. Introduction
2. Microbiome in marine environment
2.1 Marine archaea
2.2 Extremophilic marine bacteria
2.3 Marine virus
2.4 Marine phytoplanktons
2.5 Marine mixoplanktons
2.6 Marine diatoms
2.7 Marine fungi
3. Effect of climate change on marine microbiota
4. Permafrost microbiome
4.1 Microbes and archaea
4.2 Virus
4.3 Algae
4.4 Fungi
5. Impact of climate change on permafrost microbiome
6. Terrestrial microbiome
6.1 Role of bacteria in biogeochemical cycle
7. Impact of climate change on terrestrial microbiome
8. Conclusion
References
9
Metagenomics approaches for microbiome analysis
1. Introduction
2. Diversity of gut microbiome
3. Functional metagenomics
4. Bioinformatics tools
5. Conclusion
References
Further reading
10
Study of microbial communities in degrading toxic pollutants in the wastewater and solid waste treatment indus ...
1. Introduction
2. Waste generation
3. Types of toxic compounds
3.1 Organic pollutants.
4. Inorganic pollutants
5. Microbial interaction with organic pollutant
6. Microbial communities with respect to degradation of organic compound
7. Structure and methods
7.1 Amplified ribosomal DNA restriction analysis
7.2 Terminal restriction length polymorphism: T-RFLP
7.3 Denaturing gradient gel electrophoresis
7.4 Ion torrent sequencing
7.5 Illumina sequencing
7.6 Quorum sensing system
8. Future perspectives
References
Index
Back Cover.