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Combinatorial pattern matching algorithms in computational biology using Perl and R
1 online resource (352 pages) : illustrations
Emphasizing the search for patterns within and between biological sequences, trees, and graphs, Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R shows how combinatorial pattern matching algorithms can solve computational biology problems that arise in the analysis of genomic, transcriptomic, proteomic, metabolomic, and interactomic data. It implements the algorithms in Perl and R, two widely used scripting languages in computational biology. The book provides a well-rounded explanation of traditional issues as well as an up-to-date account of more recent deve.
Front Cover; Contents; Foreword; Preface; Chapter 1. Introduction; Chapter 2. Sequences; Chapter 3. Simple Pattern Matching in Sequences; Chapter 4. General Pattern Matching in Sequences; Chapter 5. Trees; Chapter 6. Simple Pattern Matching in Trees; Chapter 7. General Pattern Matching in Trees; Chapter 8. Graphs; Chapter 9. Simple Pattern Matching in Graphs; Chapter 10. General Pattern Matching in Graphs; Appendix A. Elements of Perl; Appendix B. Elements of R; References; Index; Back Cover.
Includes bibliographical references (pages 339-349) and index.
Programming languages (Electronic computers)
Chapman and Hall/CRC mathematical & computational biology series