Molecular modeling of nucleic acids /

Bibliographic Details
Corporate Authors:	American Chemical Society. Division of Computers in Chemistry, American Chemical Society. Meeting
Other Authors:	Leontis, Neocles B., SantaLucia, John, 1964-
Format:	eBook
Language:	English
Language Notes:	English.
Published:	Washington, D.C. : American Chemical Society, ©1998.
Series:	ACS symposium series ; 682.
Subjects:	Nucleic acids > Structure > Congresses. Nucleic acids > Structure > Computer simulation > Congresses. Mathematical models. Nucleic acids. Computing Methodologies Nucleic Acids, Nucleotides, and Nucleosides Models, Theoretical Investigative Techniques Information Science Chemicals and Drugs Analytical, Diagnostic and Therapeutic Techniques and Equipment Nucleic Acids Computer Simulation Models, Molecular Acides nucléiques > Structure > Congrès. Acides nucléiques > Structure > Simulation par ordinateur > Congrès. Modèles mathématiques. Acides nucléiques. Simulation par ordinateur. mathematical models. simulation. SCIENCE > Life Sciences > Biochemistry. Nucleic acids Mathematical models Nucleic acids > Structure Nucleic acids > Structure > Computer simulation > Congresses Nucleic acids > Structure > Congresses Electronic books. Congress proceedings (reports) Conference papers and proceedings Conference papers and proceedings. Actes de congrès.
Online Access:	Connect to the full text of this electronic book

Table of Contents:

The energetics of nucleotide ionization in water-counterion environments / Harshica Fernando, Nancy S. Kim, George A. Papadantonakis, and Pierre R. LeBreton
Parameterization and simulation of the physical properties of phosphorothioate nucleic acids / Kenneth E. Lind, Luke D. Sherlin, Venkatraman Mohan, Richard H. Griffey, and David M. Ferguson
Crystallographic studies of RNA internal loops / Stephen R. Holbrook
Hydrogen-bonding patterns observed in the base pairs of duplex oligonucleotides / William N. Hunter, Gordon A. Leonard, and Tom Brown
Structure and stability of DNA containing inverted anomeric centers and polarity reversals / James M. Aramini, Johan H. van de Sande, and Markus W. Germann
Conformational analysis of nucleic acids : problems and solutions / Andrew N. Lane
NMR structure determination of a 28-nucleotide signal recognition particle RNA with complete relaxation matrix methods using corrected nuclear Overhauser effect intensities / Peter Lukavsky, Todd M. Billeci, Thomas L. James, and Uli Schmitz
Molecular modeling of DNA using Raman and NMR data, and the nuclease activity of 1,10-phenanthroline-copper ion / W.L. Peticolas, M. Ghomi, A. Spassky, E.M. Evertsz, and T.S. Rush, III
Three-dimensional NOESY-NOESY hybrid-hybrid matrix refinement of a DNA three-way junction / Varatharasa Thiviyanthan, Nishantha Illangasekare, Elliott Gozansky, Frank Zhu, Neocles B. Leontis, Bruce A. Luxon, and David G. Gorenstein
Determination of structural ensembles from NMR data : conformational sampling and probability assessment / Nikolai B. Ulyanov, Anwer Mujeeb, Alessandro Donati, Patrick Furrer, He Liu, Shauna Farr-Jones, David E. Konerding, Uli Schmitz, and Thomas L. James
NMR studies of the binding of an SPXX-containing peptide from high-molecular-weight basic nuclear proteins to an A-T rich DNA hairpin / Ning Zhou and Hans J. Vogel
Thermodynamics of duplex formation and mismatch discrimination on photolithographically synthesized oligonucleotide arrays / Jonathan E. Forman, Ian D. Walton, David Stern, Richard P. Rava, and Mark O. Trulson
RNA folding dynamics : computer simulations by a genetic algorithm / A.P. Gultyaev, F.H.D. van Batenburg, and C.W.A. Pleij
An updated recursive algorithm for RNA secondary structure prediction with improved thermodynamic parameters / David H. Mathews, Troy C. Andre, James Kim, Douglas H. Turner, and Michael Zuker
Modeling of DNA via molecular dynamics simulation : structure, bending, and conformational t[r]ansitions / D.L. Beveridge, M.A. Young, and D. Sprous
Molecular dynamics simulations on nucleic acid systems using the Cornell and others force field and particle mesh Ewald electrostatics / T.E. Cheatham, III, J.L. Miller, T.I. Spector, P. Cieplak, and P.A. Kollman
Observations on the A versus B equilibrium in molecular dynamics simulations of duplex DNA and RNA / Alexander D. MacKerell, Jr.
Modeling duplex DNA oligonucleotides with modified pyrimidine bases / John Miller, Michael Cooney, Karol Miaskiewicz, and Roman Osman
How the TATA box selects its protein partner / Nina Pastor, Leonardo Pardo, and Harel Weinstein
RNA tectonics and modular modeling of RNA / Eric Westhof, Benoît Masquida, and Luc Jaeger
Hairpin ribozyme structure and dynamics / A.R. Banerjee, A. Berzal-Herranz, J. Bond, S. Butcher, J.A. Esteban, J.E. Heckman, B. Sargueil, N. Walter, and J.M. Burke
Molecular modeling studies on the ribosome / Stephen C. Harvey, Margaret S. VanLoock, Thomas R. Rasterwood, and Robert K.-Z. Tan
Modeling unusual nucleic acid structures / Thomas J. Macke and David A. Case
Computer RNA three-dimensional modeling from low-resolution data and multiple-sequence information / François Major, Sébastien Lemieux, and Abdelmjid Ftouhi
Comparative modeling of the three-dimensional structure of signal recognition particle RNA / Christian Zwieb, Krishne Gowda, Niels Larsen, and Florian Müller.