Terminology, Ontology and their Implementations : Teaching Guide and Notes /
This set of teaching notes provides extensive guidance for educators related to its sister title and contains numerous tools and questions to help educators provide didactics and evaluation of students in this essential area of biomedical informatics. This is needed to understand the central topics...
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| Format: | eBook |
| Language: | English |
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Cham :
Springer International Publishing : Imprint: Springer,
2022.
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| Edition: | 1st ed. 2022. |
| Series: | Health Informatics,
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| Subjects: | |
| Online Access: | Connect to the full text of this electronic book |
Table of Contents:
- Introduction
- History of Terminology and Ontology
- Knowledge Representation and the Logical Basis of Ontology
- Theoretical Foundations of Terminology
- Terminology Requirements and Standards Development
- Terminology Design
- Maintenance
- Quality Control
- Realism Based Ontology
- What is an ontology?
- Ontology vs. terminology
- Ontology vs. taxonomy
- Ontologies and databases
- Ontology and the Semantic Web
- Ontology in biomedical informatics
- Bad ontologies
- The concept orientation
- Why ontologies so often fail
- Recipes for success
- Examples of successful ontologies and of how they are being used
- The place of Referent Tracking in Biomedical Informatics
- Introduction: what is Referent Tracking (RT)? How does it relate to ontology? What does it aim to achieve? Why does it matter?
- Basic principles: how RT is build on top of three important distinctions made in realism-based ontology: particulars types, continuants occurrents, referents references
- Syntax and semantics of RT-expressions
- RT as a development tool for ontologies
- Using RT to detect and prevent flaws in scientific research and ambiguities and inconsistencies in reports and papers
- RT as a solution for semantic interoperability
- Werner Ceusters
- Bioontology in Service of Translational Science
- Introduction to Bioontologies and the OBO Foundry
- The Gene Ontology
- Overview of GO Content and Structure
- GO annotation
- Term Enrichment/Pathway Analysis
- Success Stories
- Challenges
- Bioontologies and Data Annotation Systems
- ImmPort/HIPC
- Kidney Precision Medicine Project
- GEO and Array Express
- Disease and Phenotype Annotation for Translational Studies
- Use of Ontologies at Mouse Genome Informatics
- HPO and the Monarch Project
- Compositionality: An Implementation Guide
- Interface Terminologies
- SNOMED CT
- RxNorm and NDF-RT and ATC codes
- LOINC
- SOLOR
- ICD
- CPT
- HCC Codes / Risk Adjustment and MACRA / MIPS
- DRGs
- NCI EVS
- Nursing Terminologies
- RED / MED
- UMLS Metathesauras and knowledge sources
- Terminological Systems
- HL7 FHIR and APIs
- Lessons Learned and Suggested Research Agenda
- The future of coding and coding systems
- Conclusion.