Gene mapping, discovery, and expression : methods and protocols /
| Other Authors: | |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
Totowa, N.J. :
Humana Press,
[2006]
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| Series: | Methods in molecular biology (Clifton, N.J.) ;
v. 338. |
| Subjects: |
Table of Contents:
- Use of genome browsers to locate your favorite genes
- Methods for identifying and mapping recent segmental and gene duplications in eukaryotic genomes
- Identification and mapping of paralogous genes on a known genomic DNA sequence
- Quantitative DNA fiber mapping in genome research and construction of physical maps
- PRINS for mapping single copy genes
- Vista family of computational tools for comparative analysis of DNA sequences and whole genomes
- Computational prediction of cis-regulatory modules from multispecies alignments using Galaxy, Table Browser, and GALA
- Comparative promoter analysis in vertebrate genomes with the CORG workbench
- cis-regulatory region analysis using BEARR
- A database of 9-mers from promoter region of human protein-coding genes
- A program toolkit for the analysis of regulatory regions of genes
- Analysis of allele-specific gene expression
- Construction of micro-RNA containing vectors for expression in mammalian cells
- Mining microarray data at NCBI's gene expression omnibus (GEO)
- The Stanford microarray database : a user's guide
- Detecting nucleosome ladders on unique DNA sequences in mouse liver nuclei
- DNA methyltransferase probing of DNA-protein interactions
- Protein binding microarrays (PBMS) for the rapid, high-throughput characterization of the sequence specificities of DNA binding proteins
- Quantitative profiling of protein-DNA binding on microarrays
- Analysis of protein-DNA binding by streptavidin-agarose pulldown
- Isolation and mass spectrometry of specific DNA-binding proteins
- Isolation of transcription factor complexes by in vivo biotinylation tagging and direct binding to streptavidin beads