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Pattern discovery in biomolecular data : tools, techniques, and applications /

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Bibliographic Details
Other Authors: Wang, Jason T. L., Shapiro, Bruce A., Shasha, Dennis Elliott
Format: Book
Language:English
Published: New York : Oxford University, 1999.
Subjects:
Base Sequence.
Amino Acid Sequence.
Automation > methods.
Information Storage and Retrieval.
Pattern Recognition.
Table of Contents:
  • Pt. 1. Finding patterns in sequences
  • Discovering patterns in DNA sequences by the algorithmic significance method / Aleksandar Milosavljević
  • Encoding schemes
  • Algorithms for minimal length encoding
  • Algorithmic significance
  • Applications
  • Future work and generalizations
  • Assembling blocks / Jorja G. Henikoff
  • Algorithmic techniques
  • Future work and generalizations
  • MEME, MAST, and meta-MEME: new tools for motif discovery in protein sequences / Timothy L. Bailey ... [et al.]
  • Software for finding sequence motifs
  • Methods
  • Results
  • Discussion
  • Pattern discovery and classification in biosequences / Jason T.L. Wang ... [et al.]
  • Pattern discovery in protein sequences
  • Classification of DNA sequences
  • Generalizations and future work
  • Pt. 2. Finding patterns in 3D structures
  • Motif discovery in protein structure databases / Janice Glasgow, Evan Steeg, Suzanne Fortier
  • Protein motifs
  • Computational approaches to knowledge discovery
  • Assessing protein motifs and discovery methods
  • Issues in protein motif discovery
  • Conclusion
  • Systematic detection of protein structural motifs / Kentaro Tomii, Minoru Kanehisa
  • Structural building blocks
  • Symbol string representation of 3D structures
  • Detection of structural motifs by structure comparisons
  • Detection of structural motifs by sequence comparisons
  • Discussion and future directions
  • Representation and matching of small flexible molecules in large databases of 3D molecular information / Isidore Rigoutsos ... [et al.]
  • The representation scheme
  • Storage/retrieval and threading
  • The algorithm
  • Experimental results
  • Discussion
  • Pt. 3. System components for discovery
  • A framework for biological pattern discovery on networks of workstations / Bin Li, Dennis Shasha, Jason T.L. Wang
  • Biological pattern discovery
  • Biological pattern discovery framework
  • Parallel computing on networks of workstations
  • Parallel E-dag traversal in PLinda
  • Discovering concepts in structural data / Diane J. Cook, Lawrence B. Holder, Gehad Galal
  • Algorithmic techniques
  • Future work and generalizations
  • Overview: a system for tracking and managing the results from sequence comparison programs / David P. Yee ... [et al.]
  • Related work
  • Molecular biology applications and databases
  • Algorithmic techniques
  • The overview information model
  • Biological experiments and applications: user scenarios
  • Future work and generalizations
  • RNA structure analysis: a multifaceted approach / Bruce A. Shapiro ... [et al.]
  • A brief introduction to RNA
  • RNA folding problem
  • The genetic algorithm: an overview
  • The structurelab workbench
  • Structurelab in use
  • Future directions and challenges.